Schedule

Subject to change

Date	Instructor	Topic	Links
08/29	DK	Introduction/Linux Commandline Basics	intro slides notebook  reference
08/31	DK	Linux Commandline File Processing	slides notebook
09/05		Assignment 1 Due 11:59pm
09/05	JB	Getting Started with Python	slides notebook
09/07	JB	Control Flow and Basic Data Visualization with matplotlib	slides notebook
09/12		Assignment 2 Due 11:59pm
09/12	JB	numpy Arrays	slides notebook
09/14	JF	Systems Biology with PySB	slides notebook
09/19		Assignment 3 Due 11:59pm
09/19	JB	Dictionaries and Sets and Function Fitting	slides notebook
09/21	JB	Sequence Analysis with Biopython	slides notebook
09/26		Assignment 4 Due 11:59pm
09/26	JB	More Sequence Analysis	slides notebook
09/28	JB	EMR with pandas	slides notebook
10/03		Assignment 5 Due 11:59pm
10/03	MG	Structure Analysis with ProDy	slides notebook
10/05	MG	Protein Analysis Continued	slides notebook
10/10		Assignment 6 Due 11:59pm
10/10	MG	Molecular Dynamics (mdanalysis)	slides notebook
10/12	MG	More Molecular Dynamics	slides notebook
10/17		Assignment 7 Due 11:59pm
10/17	MG	Clustering	slides notebook
10/19	DK	Regular Expressions	slides notebook
10/24		Assignment 8 Due 11:59pm
10/24	DK	Web Services and Communication Protocols	slides notebook
10/26	DK	From Data to Model to the World Web Web	slides notebook
10/31		Assignment 9 Due 11:59pm
10/31	DK	Cheminformatics (Pybel)	slides notebook
11/02	SU	Dimensionality Reduction	slides notebook
11/07		Assignment 10 Due 11:59pm
11/07	SU	Machine Learning with sklearn	slides notebook
11/09	DK	Process Control with subprocess	slides notebook
11/14		Assignment 11 Due 11:59pm
11/14	SU	Bioimaging I	slides notebook
11/16	SU	Bioimaging II	slides notebook
11/21		Thanksgiving Break
11/23		Thanksgiving Break
11/28		Assignment 12 Due 11:59pm
11/28	SU	Deep Learning	slides notebook
11/30	DK	multiprocessing	slides notebook
12/05		Project Presentations
12/07		Project Presentations
12/12		Movie and Pizza