| 8/30 | Introduction/Linux Commandline Basics |
slides reference |
| 9/1 | Linux Commandline File Processing |
slides |
| 9/6 | Assignment 1 Due 11:59pm | |
| 9/6 | Getting Started with Python |
slides |
| 9/8 | Systems Biology with PySB |
slides |
| 9/13 | Assignment 2 Due 11:59pm | |
| 9/13 | Control Flow and Basic Data Visualization with matplotlib |
slides |
| 9/15 | numpy Arrays |
slides |
| 9/20 | Assignment 3 Due 11:59pm | |
| 9/20 | Dictionaries, Sets, and Function Fitting |
slides |
| 9/22 | Sequence Analysis with Biopython |
slides |
| 9/27 | Assignment 4 Due 11:59pm | |
| 9/27 | More Sequence Analysis |
slides |
| 9/29 | Structure Analysis with ProDy |
slides |
| 10/4 | Assignment 5 Due 11:59pm | |
| 10/4 | Protein Analysis Continued |
slides |
| 10/6 | Molecular Dynamics (mdanalysis) |
slides |
| 10/11 | Assignment 6 Due 11:59pm | |
| 10/11 | More Molecular Dynamics |
slides |
| 10/13 | Clustering |
slides |
| 10/18 | Assignment 7 Due 11:59pm | |
| 10/18 | Dimensionality Reduction |
slides |
| 10/20 | Regular Expressions |
slides |
| 10/25 | Assignment 8 Due 11:59pm | |
| 10/25 | Web Services and Communication Protocols |
slides |
| 10/27 | From Data to Model to the World Web Web |
slides |
| 11/1 | Assignment 9 Due 11:59pm | |
| 11/1 | Cheminformatics (Pybel) |
slides |
| 11/3 | Machine Learning with sklearn |
slides |
| 11/8 | Assignment 10 Due 11:59pm | |
| 11/8 | EMR with pandas |
slides |
| 11/10 | Bioimaging I |
slides |
| 11/15 | Assignment 11 Due 11:59pm | |
| 11/15 | Bioimaging II |
slides |
| 11/17 | Process Control with subprocess |
slides |
| 11/22 | Thanksgiving Break | |
| 11/24 | Thanksgiving Break | |
| 11/29 | Assignment 12 Due 11:59pm | |
| 11/29 | multiprocessing |
slides |
| 12/1 | Deep Learning |
slides |
| 12/6 | Project Presentations | |
| 12/8 | Project Presentations | |